Index: NuGet/net40/EF6/config.transform
==================================================================
--- NuGet/net40/EF6/config.transform
+++ NuGet/net40/EF6/config.transform
@@ -1,8 +1,9 @@
 <configuration>
   <system.data>
     <DbProviderFactories>
+      <remove invariant="System.Data.SQLite" />
       <remove invariant="System.Data.SQLite.EF6" />
       <add name="SQLite Data Provider (Entity Framework 6)"
            invariant="System.Data.SQLite.EF6"
            description=".Net Framework Data Provider for SQLite (Entity Framework 6)"
            type="System.Data.SQLite.EF6.SQLiteProviderFactory, System.Data.SQLite.EF6" />